ensemble\_md.analysis
=====================

ensemble\_md.analysis.analyze_traj
----------------------------------

.. automodule:: ensemble_md.analysis.analyze_traj
   :members:
   :undoc-members:

ensemble\_md.analysis.analyze_matrix
------------------------------------

.. automodule:: ensemble_md.analysis.analyze_matrix
   :members:
   :undoc-members:

ensemble\_md.analysis.analyze_free_energy
-----------------------------------------

.. automodule:: ensemble_md.analysis.analyze_free_energy
   :members:
   :undoc-members:

ensemble\_md.analysis.synthesize_data
-----------------------------------------

.. automodule:: ensemble_md.analysis.synthesize_data
   :members:
   :undoc-members:

ensemble\_md.analysis.clustering
-----------------------------------------

.. automodule:: ensemble_md.analysis.clustering
   :members:
   :undoc-members:

ensemble\_md.analysis.msm_analysis
----------------------------------

.. automodule:: ensemble_md.analysis.msm_analysis
   :members:
   :undoc-members: