ensemble_md
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Getting started:
1. Introduction
2. Installation
3. Testing
Theory:
1. Basic idea
2. REXEE configuration
3. State transitions in REXEE simulations
4. Proposal schemes
5. Correction schemes
6. Free energy calculations
Launching REXEE simulations:
1. Command-line interface (CLI)
2. Implemented workflow
3. Input YAML parameters
4. Input MDP parameters
5. Some rules of thumb
Tutorials:
Tutorial 1: Launching a REXEE simulation
Tutorial 2: Analyzing a REXEE simulation
Tutorial 3: Multi-topology REXEE (MT-REXEE) simulations
API documentation:
ensemble_md.replica_exchange_EE
ensemble_md.analysis
ensemble_md.utils
References:
References
ensemble_md
Tutorial 3: Multi-topology REXEE (MT-REXEE) simulations
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Tutorial 3: Multi-topology REXEE (MT-REXEE) simulations
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